I fixed my problem, I had to find HS 1.3.2.0, and I used the last RL version from git. So far so good, its working, MAME, RetroArch (but I better upgrade my version, im still using the stable one), NEO GEO MVS (but GLSL is only working with MAME).
Thanks
Edit: RA problem fixed by renaming config folder, but its time to upgrade my super old version.
NEO GEO problem also fixed by turning off HyperLaunch in HyperHQ.
So HS 1.3.2.0 + RL 3.1.0.5 seems to be a good combo